Institute of Molecular Cell and Systems Biology Seminar Series 2019/20
09.10.2019
Hugh Nimmo
How do plants sense time and temperature? A biochemical approach
Papers mentioned in the talk:
James, A.B. , Monreal, J.A., Nimmo, G.A., Kelly, C.L., Herzyk, P. , Jenkins, G.I. and Nimmo, H.G. (2008) The circadian clock in Arabidopsis roots is a simplified slave version of the clock in shoots. Science, 322(5909), pp. 1832-1835. (doi:10.1126/science.1161403)
Calixto, C. P.G., Tzioutziou, N. A., James, A. B. , Hornyik, C., Guo, W., Zhang, R., Nimmo, H. G. and Brown, J. W.S. (2019) Cold-dependent expression and alternative splicing of Arabidopsis long non-coding RNAs. Frontiers in Plant Science, 10, 235. (doi:10.3389/fpls.2019.00235) (PMID:30891054) (PMCID:PMC6413719)
Calixto, C. P.G., Guo, W., James, A. B. , Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H. , Zhang, R. and Brown, J. W.S. (2018) Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome. Plant Cell, 30, pp. 1424-1444. (doi:10.1105/tpc.18.00177) (PMID:29764987)
Nimmo, H. G. (2018) Entrainment of Arabidopsis roots to the light:dark cycle by light piping. Plant, Cell and Environment, 41(8), pp. 1742-1748. (doi:10.1111/pce.13137) (PMID:29314066)
Zhang, R. et al. (2017) A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing. Nucleic Acids Research, 45(9), pp. 5061-5073. (doi:10.1093/nar/gkx267) (PMID:28402429) (PMCID:PMC5435985)
Bordage, S., Sullivan, S., Laird, J., Millar, A. J. and Nimmo, H. G. (2016) Organ specificity in the plant circadian system is explained by different light inputs to the shoot and root clocks. New Phytologist, 212(1), pp. 136-149. (doi:10.1111/nph.14024) (PMID:27240972) (PMCID:PMC5006879)
Zhang, R. et al. (2015) AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist, 208(1), pp. 96-101. (doi:10.1111/nph.13545) (PMID:26111100)
James, A.B. , Syed, N.H., Brown, J.W.S. and Nimmo, H.G. (2012) Thermoplasticity in the plant circadian clock: how plants tell the time-perature. Plant Signaling and Behavior, 7(10), pp. 1219-1223. (doi:10.4161/psb.21491)
James, A.B. , Syed, N.H., Bordage, S., Marshall, J., Nimmo, G.M., Jenkins, G.I. , Herzyk, P. , Brown, J.W.S. and Nimmo, H.G. (2012) Alternative splicing mediates responses of the arabidopsis circadian clock to temperature changes. Plant Cell, 24(3), pp. 961-981. (doi:10.1105/tpc.111.093948) (PMID:22408072) (PMCID:PMC3336117)