Claire Walsh: The human organ atlas as a resource for open biomedical research

Claire Walsh

University College London

The human organ atlas as a resource for open biomedical research





Link to Human Organ Atlas


Link to a YouTube about the Human Organ Atlas


The Scientist Article about the Human Organ Atlas


Papers that relate to the talk:


 
Vasculature segmentation in 3D hierarchical phase-contrast tomography images of human kidneys.
Jain Y, Walsh CL, Yagis E, Aslani S, Nandanwar S, Zhou Y, Ha J, Gustilo KS, Brunet J, Rahmani S, Tafforeau P, Bellier A, Weber GM, Lee PD, Börner K.Nat Commun. 2026 Jul 3. doi: 10.1038/s41467-026-74050-8. Online ahead of print.PMID: 42399229 

Evolution of hierarchical phase-contrast tomography on the European Synchrotron beamlines BM05 and BM18: a whole adult human brain imaging case study.
Dejea H, Brunet J, Urban T, Berruyer C, Mirone A, Jarnias C, Bellier A, Walsh C, Lee PD, Tafforeau P.J Synchrotron Radiat. 2026 Jul 1;33(Pt 4):1180-1189. doi: 10.1107/S1600577526005503. Epub 2026 Jun 19.PMID: 42319807 

Bridging the microstructural gap in human connectomics using hierarchical phase-contrast tomography as a reference for diffusion MRI in the human brain.
Wanjau E, Chourrout M, Maffei C, Balbastre Y, Keenlyside A, Brunet J, Sharma A, Huang SY, Tafforeau P, Fischl B, Yendiki A, Lee PD, Walsh CL.bioRxiv [Preprint]. 2026 Apr 6:2026.04.02.715729. doi: 10.64898/2026.04.02.715729.PMID: 41993538 

The Human Organ Atlas.
Walsh CL, Brunet J, Stansby D, Gaisné G, Zhou Y, Ackermann M, Bellier A, Berruyer C, Bocciarelli A, Bodin M, de Bakker BS, Dejea H, Antolinos AM, Engel K, Götz A, Jacob J, Jonigk D, Purzycka J, Urban T, Verleden SE, Xue R, Tafforeau P, Lee PD.Sci Adv. 2026 Mar 13;12(11):eadz2240. doi: 10.1126/sciadv.adz2240. Epub 2026 Mar 11.PMID: 41811956 

The Extremely Brilliant Brain: An Isotropic Microscale Human Brain Dataset.
Chourrout M, Keenlyside A, Wanjau E, Balbastre Y, Yagis E, Brunet J, Stansby D, Engel K, Gui X, Thönnißen J, Dickscheid T, Lamalle L, Bellier A, Vivekananda U, Tafforeau P, Lee PD, Walsh CL.bioRxiv [Preprint]. 2026 Feb 2:2026.01.27.702076. doi: 10.64898/2026.01.27.702076.PMID: 41659498